Note the non-null

density near zero as a manifestation of the edge defects. Figure 3 Participation number for the closed structure. Participation number P(E) of the available energy states for the structure with no defects (a) and with the pentagonal defect in the centre (b). The edge states are localized so only few states contribute to a certain site; this is shown in Figure 4 for the local density of states at E=0 and ρ(i,E=0) for both the ND (Figure 4a) and PD (Figure 4b). Clearly, these are edge states, and the PD structure shows contribution from two zones, compared to the ND structure with one. The effect of the PD on the density of states near E=0 is of geometrical nature; the whole structure is affected by

the presence of the pentagon since it changes the relative orientation of the edge sites JAK inhibitor review and induces the creation of edge states. This has to do mainly with the atom rearrangement in the lower part of the structure, which creates new edge states and, clearly, the PD sites do not have an explicit contribution to such sites. For larger values of E, in the local density of ρ(i,E=2.6), more sites contribute to that energy (see Figure 5). Specifically, we see the contribution of sites around the PD as it can be seen in Figure 5b, where a star shape appears. The rest of the sites contribute more or less similarly to the structure with ND (Figure 5a). Figure 4 Local density of states for E = 0. Spatial distribution of the local density for ρ(i,E) for the energy E close to zero Inhibitor Library Alanine-glyoxylate transaminase in (a) a structure with no defect and (b) one with the pentagonal defect in the centre. Due to single-bond atoms (see Figure 1), the quantum dot is not fully symmetric around a central vertical axis. Figure 5 Local density of states for E = 2.6 eV. Same as Figure 6 but for the energy E

= 2.6 eV. Figure 6 Density of states for the open structure. Density of states for the graphene sheet with the pentagon at its centre (red line) and without it (black line). Note the displacement of the different peaks. As the change in behaviour with the presence of PD is near zero energy (around the Fermi energy), we concentrate in the analysis of the transport properties around such energy. We have also checked our previous results in the open structure calculating the density of states (Figure 6) and the transmission function (Figure 7). The density of states shows several peaks associated with both the presence of quasi-bound states (due to the circular confinement and the defect) and localized edge states due to circular boundaries of the finite lattice. These results are clearly observed in the peak structure of the transmission function (Figure 7), where we observe changes in the quasi-bound states available to transport and the creation of new peaks in the transmission function. Figure 7 Transmission function for the open structure.