Electronic supplementary material Additional file 1: The 38 seque

Electronic supplementary material Additional file 1: The 38 sequenced Acinetobacter strains used in this study. (PDF 130 KB) Additional file 2: Phylogenetic tree based on 819 core CDSs (without recombination filtering). (PDF 116 KB) Additional file 3: Phylogenetic tree based on 42 ribosomal genes (Jolley et al. ) [15]. (PDF 115 KB) Additional file 4: K-string analysis of the 38 Acinetobacter strains used in

this study. (PDF 80 KB) Additional file 5: Genomic fluidity analysis of the 38 Acinetobacter strains used in this study. (PDF 79 KB) Additional file 6: Pair-wise gene content comparison of the 38 Acinetobacter strains used in this study. learn more (PDF 66 KB) References 1. Linnaeus C: Systema naturæ, sive regna tria naturæ systematice proposita per classes, ordines, genera, & species. Leiden: Apud Theodorum Haak; 1735. 2. Darwin C: On the origin of species by means of natural selection,

or the preservation of favoured races in the struggle for life. London: John Murray, Albemarle Street; 1859. 3. Godreuil S, Cohan F, Shah H, Tibayrenc M: Which species concept for pathogenic bacteria?: An E-Debate. Infect Genet Evol 2005, 5:375–387.PubMedCrossRef 4. Konstantinidis KT, Ramette A, Tiedje JM: The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci 2006, 361:1929–1940.PubMedCrossRef 5. Van Belkum A, Tassios PT, Dijkshoorn L, Haeggman S, Cookson B, Fry NK, Fussing V, Green J, Feil E, Gerner-Smidt P, Brisse S, Struelens M, for the European Society of Clinical M, Infectious Diseases Study Group on Epidemiological M: Guidelines for the validation and application of typing methods for use in bacterial epidemiology. LY2157299 Clin Microbiol Infect 2007, 13:1–46.PubMedCrossRef 6. Sneath PHA, Sokal RR: Numerical taxonomy: The principles and practice of numerical classification. San Francisco: W. H. Freeman; 1973. 7. Lee KY, Wahl R, Barbu E: Contenu en bases purique et pyrimidiques des acides deoxyribonucleiques des bacteries. Ann Inst

Pasteur 1956, 91:212–224. 8. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Truper HG: Report of the why ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 1987, 37:463–464. 9. Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, Feil EJ, Stackebrandt E, Van de Peer Y, Vandamme P, Thompson FL, Swings J: Opinion: Re-evaluating prokaryotic species. Nat Rev Microbiol 2005, 3:733–739.PubMedCrossRef 10. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM: DNA–DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007, 57:81–91.PubMedCrossRef 11. Rosselló-Mora R, Amann R: The species concept for prokaryotes. FEMS Microbiol Rev 2001, 25:39–67.PubMedCrossRef 12. Rappé MS, Giovannoni SJ: The uncultured microbial majority. Annu Rev Microbiol 2003, 57:369–394.PubMedCrossRef 13.

Comments are closed.